Let's see if we can keep this going... all three movies need to be related somehow for each set, like this:

Good: The Matrix
Bad: Matrix: Reloaded
Ugly: Matrix: Revolutions
(All are in the same trilogy)

Good: Appleseed
Bad: Steamboy
Ugly: Galerians: Rion
(All are anime movies)

Good: Pitch Black
Bad: XXX
Ugly: The Fast and the Furious
(All are Vin Diesel movies)
Other possibilities might be 3 movies about the same theme, featuring the same actor, or by the same director.